The motion relative the center of mass includes the rotation of the molecule. The rotation alone can also be described by 3 coordinates, which are usually the two polar angles which fix a certain direction in the molecule and the angle of rotation about that direction. Thus, coordinates are left for describing the relative motion of the nuclei with fixed orientation of the system as a whole, in other words, we have vibrational degrees of freedom. However, for linear molecules two coordinates, for instance, the two angles of the internuclear axis, are sufficient for describing the rotation and therefore for linear molecules we have vibrational degrees of freedom.
When the molecule is in its equilibrium configuration, the coordinates of nucleus in the
molecular coordinate frame are written
and, at a displacement
configuration, the Cartesian vibrational displacement coordinates are given by:
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